Thursday, April 29, 2010

Manuscripts where Indian Genome Variation Consortium is an author

1.Indian Genome Variation Consortium. The Indian Genome Variation database (IGVdb): a project overview. Hum Genet. 2005 Oct;118(1):1-11. Epub 2005 Aug 25.Review. PubMed PMID: 16133172.

2.Mahajan A, Chavali S, Ghosh S, Kabra M, Chowdhury MR; Indian Genome Variation Consortium, Bharadwaj D. Allelic heterogeneity of molecular events in human coagulation factor IX in Asian Indians. Mutation in brief #965. Online. Hum Mutat. 2007 May;28(5):526. PubMed PMID: 17397055.

3. Gupta A, Maulik M, Nasipuri P, Chattopadhyay I, Das SK, Gangopadhyay PK; Indian Genome Variation Consortium, Ray K. Molecular diagnosis of Wilson disease using prevalent mutations and informative single-nucleotide polymorphism markers. Clin Chem. 2007 Sep;53(9):1601-8. Epub 2007 Jul 18. PubMed PMID: 17634212.

4.Biswas A, Maulik M, Das SK; Indian Genome Variation Consortium, Ray K, Ray J. Parkin polymorphisms: risk for Parkinson's disease in Indian population. Clin Genet. 2007 Nov;72(5):484-6. PubMed PMID: 17935510.

5.Saha A, Mukherjee S, Maulik M, Chandak GR; Indian Genome Variation Consortium, Ray K. Evaluation of genetic markers linked to hemophilia A locus: an Indian experience. Haematologica. 2007 Dec;92(12):1725-6..

6.Sinha S, Mishra SK, Sharma S, Patibandla PK, Mallick PK, Sharma SK, Mohanty S, Pati SS, Mishra SK, Ramteke BK, Bhatt R, Joshi H, Dash AP, Ahuja RC, Awasthi S;Indian Genome Variation Consortium, Venkatesh V, Habib S. Polymorphisms of TNF-enhancer and gene for FcgammaRIIa correlate with the severity of falciparum malaria in the ethnically diverse Indian population. Malar J. 2008 Jan 14;7:13.

7.Indian Genome Variation Consortium. Genetic landscape of the people of India: a canvas for disease gene exploration. J Genet. 2008 Apr;87(1):3-20.

8.Prasher B, Negi S, Aggarwal S, Mandal AK, Sethi TP, Deshmukh SR, Purohit SG, Sengupta S, Khanna S, Mohammad F, Garg G, Brahmachari SK; Indian Genome Variation Consortium, Mukerji M. Whole genome expression and biochemical correlates of extreme constitutional types defined in Ayurveda. J Transl Med. 2008 Sep 9;6:48.

9.Sinha S, Qidwai T, Kanchan K, Anand P, Jha GN, Pati SS, Mohanty S, Mishra SK, Tyagi PK, Sharma SK; Indian Genome Variation Consortium, Venkatesh V, Habib S. Variations in host genes encoding adhesion molecules and susceptibility to falciparum malaria in India. Malar J. 2008 Dec 4;7:250.

10.Bahl S, Ahmed I; Indian Genome Variation Consortium, Mukerji M. Utilizinglinkage disequilibrium information from Indian Genome Variation Database for mapping mutations: SCA12 case study. J Genet. 2009 Apr;88(1):55-60.

11.Sinha S, Arya V, Agarwal S; Indian Genome Variation Consortium, Habib S. Genetic differentiation of populations residing in areas of high malaria endemicity in India. J Genet. 2009 Apr;88(1):77-80. PubMed PMID: 19417547.

12.HUGO Pan-Asian SNP Consortium, Abdulla MA, Ahmed I, Assawamakin A, Bhak J, Brahmachari SK, Calacal GC, Chaurasia A, Chen CH, Chen J, Chen YT, Chu J, Cutiongco-de la Paz EM, De Ungria MC, Delfin FC, Edo J, Fuchareon S, Ghang H, Gojobori T, Han J, Ho SF, Hoh BP, Huang W, Inoko H, Jha P, Jinam TA, Jin L, Jung J, Kangwanpong D, Kampuansai J, Kennedy GC, Khurana P, Kim HL, Kim K, Kim S, Kim WY, Kimm K, Kimura R, Koike T, Kulawonganunchai S, Kumar V, Lai PS, Lee JY, LeeS, Liu ET, Majumder PP, Mandapati KK, Marzuki S, Mitchell W, Mukerji M, Naritomi K, Ngamphiw C, Niikawa N, Nishida N, Oh B, Oh S, Ohashi J, Oka A, Ong R, Padilla CD, Palittapongarnpim P, Perdigon HB, Phipps ME, Png E, Sakaki Y, Salvador JM,Sandraling Y, Scaria V, Seielstad M, Sidek MR, Sinha A, Srikummool M, Sudoyo H, Sugano S, Suryadi H, Suzuki Y, Tabbada KA, Tan A, Tokunaga K, Tongsima S, Villamor LP, Wang E, Wang Y, Wang H, Wu JY, Xiao H, Xu S, Yang JO, Shugart YY, Yoo HS, Yuan W, Zhao G, Zilfalil BA; Indian Genome Variation Consortium. Mapping human genetic diversity in Asia. Science. 2009 Dec 11;326(5959):1541-5.

13.Kumar J, Garg G, Kumar A, Sundaramoorthy E, Sanapala KR, Ghosh S, Karthikeyan G, Ramakrishnan L; Indian Genome Variation Consortium, Sengupta S. Single nucleotide polymorphisms in homocysteine metabolism pathway genes: association of CHDH A119C and MTHFR C677T with hyperhomocysteinemia. Circ Cardiovasc Genet. 2009 Dec;2(6):599-606. Epub 2009 Sep 5.

Sunday, April 18, 2010

More about IGVBrowser

IGVBrowser hosts Indian Genome variation(IGV)  data of IGV-Consortium, IGV Project has been constructed in phased manner where :
Phase I: 404 SNPs from 55 Indian populations.
Phase II: 3824 SNPs from 24 Indian Populations.
Affy 50K: ~50,000 SNPs (after quality check) from 26 Indian populations.

It provides comparison of informative markers from Indian populations with other world Populations and variation data is linked with annotation from different databases like Entrez gene, DGV, UCSC etc.

Track

Powered By Blogger